Publicações

Costa ADT, Amadei SS, Bertão-Santos A, Rodrigues T. Ready-To-Use qPCR for Detection of DNA from Trypanosoma cruzi or Other Pathogenic Organisms. J Vis Exp. 2022 (179). doi: 10.3791/63316 

 Manta FSN, Jacomasso T, Rampazzo RCP, Moreira SJM, Zahra NM, Cole ST, Avanzi C, Leal-Calvo T, Vasconcellos SEG, Suffys P, Ribeiro-Alves M, Krieger MA, Costa ADT, Moraes MO.  Development and validation of a multiplex real-time qPCR assay using GMP-grade reagents for leprosy diagnosis. PLoS Negl Trop Dis. 2022 Feb 18;16(2):e0009850. doi: 10.1371/journal.pntd.0009850 

Gräf T, Bello G, Naveca FG, Gomes M, Cardoso VLO, da Silva AF, Dezordi FZ, Dos Santos MC, Santos KCO, Batista ÉLR, Magalhães ALÁ, Vinhal F, Miyajima F, Faoro H, Khouri R, Wallau GL, Delatorre E, Siqueira MM, Resende PC; Brazilian Ministry of Health COVID-19 Genomic Surveillance Network. Phylogenetic-based inference reveals distinct transmission dynamics of SARS-CoV-2 lineages Gamma and P.2 in Brazil. iScience. 2022 Apr 15;25(4):104156. doi: 10.1016/j.isci.2022.104156. Epub 2022 Mar 26. PMID: 35368908; PMCID: PMC8957357. 

 Zobrist S, Oliveira-Silva M, Vieira AM, Bansil P, Gerth-Guyette E, Leader BT, Golden A, Slater H, de Lucena Cruz CD, Garbin E, Sagalovsky M, Pal S, Gupta V, Wolansky L, Vieira Dall’Acqua DS, Naveca GF, do Nascimento VA, Villalobos Salcedo JM, Drain PK, Tavares Costa AD, Domingo GJ, Pereira D. Screening for SARS-CoV-2 in close contacts of individuals with confirmed infection: performance and operational considerations. J Infect Dis. 2022 May 20:jiac204. doi: 10.1093/infdis/jiac204 

Oliveira WK, Ávila HL, Tadra MZ, Cardoso RL, Fadel-Pichet CMT, de Souza EM, de Oliveira Pedrosa F, Faoro H. High Genomic Identity between Clinical and Environmental Strains of Herbaspirillum frisingense Suggests Pre-Adaptation to Different Hosts and Intrinsic Resistance to Multiple Drugs. Antibiotics (Basel). 2021 Nov 18;10(11):1409. doi: 10.3390/antibiotics10111409. PMID: 34827347; PMCID: PMC8614823

Oliveira MM, Schemberger MO, Suzukawa AA, Riediger IN, do Carmo Debur M, Becker G, Resende PC, Gräf T, Balsanelli E, de Baura VA, de Souza EM, Pedrosa FO, Alves LR, Blanes L, Nardelli SC, Aguiar AM, Albrecht L, Zanette D, Ávila AR, Morello LG, Marchini FK, Dos Santos HG, Passetti F, Dallagiovanna B, Faoro H. Re-emergence of Gamma-like-II and emergence of Gamma-S:E661D SARS-CoV-2 lineages in the south of Brazil after the 2021 outbreak. Virol J. 2021 Nov 17;18(1):222. doi: 10.1186/s12985-021-01690-1. PMID: 34789293; PMCID: PMC8596384.

Oliveira WK, Ávila HL, Tadra MZ, Cardoso RL, Fadel-Pichet CMT, de Souza EM, de Oliveira Pedrosa F, Faoro H. High Genomic Identity between Clinical and Environmental Strains of Herbaspirillum frisingense Suggests Pre-Adaptation to Different Hosts and Intrinsic Resistance to Multiple Drugs. Antibiotics (Basel). 2021 Nov 18;10(11):1409. doi: 10.3390/antibiotics10111409. PMID: 34827347; PMCID: PMC8614823

Vieira AZ, Raittz RT, Faoro H. Origin and evolution of nonulosonic acid synthases and their relationship with bacterial pathogenicity revealed by a large-scale phylogenetic analysis. Microb Genom. 2021 Apr;7(4). doi: 10.1099/mgen.0.000563. PMID: 33848237. 

Raittz RT, Reginatto De Pierri C, Maluk M, Bueno Batista M, Carmona M, Junghare M, Faoro H, Cruz LM, Battistoni F, Souza E, Pedrosa FO, Chen WM, Poole PS, Dixon RA, James EK. Comparative Genomics Provides Insights into the Taxonomy of Azoarcus and Reveals Separate Origins of Nif Genes in the Proposed Azoarcus and Aromatoleum Genera. Genes (Basel). 2021 Jan 7;12(1):71. doi: 10.3390/genes12010071. PMID: 33430351; PMCID: PMC7825797. 

GOGOLA, J. L. ; MARTINS, G. ; GEVAERD, A. ; BLANES, L. ; CARDOSO, J. ; MARCHINI, F. K. ; BANKS, C. E. ; BERGAMINI, M. F. ; MARCOLINO-JUNIOR, L. H. . Label-free Aptasensor for p24-HIV protein detection based on Graphene Quantum Dots as an electrochemical signal amplifier. ANALYTICA CHIMICA ACTA, v. 24, p. 338548, 2021.

AOKI, M. N. ; COELHO, B. O. ; GOES, L. G. B. ; MINOPRIO, P. ; DURIGON, E. L. ; MORELLO, L. G. ; MARCHINI, F. K. ; RIEDIGER, I. N. ; DEBUR, M. C. ; NAKAYA, H. I. ; BLANES, L. . Colorimetric RT-LAMP SARS-CoV-2 Diagnostic Sensitivity Relies on Color Interpretation and Viral Load. Scientific Reports, v. 1, p. 1, 2021.

Vieira AZ; Raittz RT; and Faoro H. Origin and evolution of nonulosonic acid synthases and their relationship with bacterial pathogenicity revealed by a large-scale phylogenetic analysisMicrobial Genomics ( IF 4.632 ).2021. doi10.1099/mgen.0.000563

Costa ADTC;  Aguiar ACC, Silva AM and Pereira DB. Point-of-Care Strategies Applied to Malaria Diagnosis . Intechopen. 2021. doi10.5772/intechopen.96721.

Coelho BO;  Sanchuki HBS; Zanette DL; Nardin JM; Morales HMP; Fornazari B;  Aoki MN; Blanes L. Essential properties and pitfalls of colorimetric Reverse Transcription Loop-mediated Isothermal Amplification as a point-of-care test for SARS-CoV-2 diagnosis Mol Med. 2021 Mar 26;27(1):30. doi: 10.1186/s10020-021-00289-0.

Aoki MN; Stein A, de Oliveira JC; Chammas R; Uno M; Munhoz FBA; Marin AM and Canzian F. Susceptibility loci for pancreatic câncer in the Brazilian population. BMC Med Genomics (2021) 14:111. doi:10.1186/s12920-021-00956-5.

Costa ADT; Aguiar ACC; Silva AM; Pereira DB. Point-of-care strategies applied to malaria diagnosis, in Current Topics and Emerging Issues in Malaria Elimination, IntechOpen Ltda, London,2021, DOI: 10. 5772/intechopen.96721.

De Oliveira VK; Camargo BD; Alexandrino F; Morello LG; Marchini FK; Aoki MN; Lucas Blanes. A low-cost PCR instrument for molecular disease diagnostics based on customized printed circuit board heaters. Biomedical Microdevices volume 23, Article number: 24 (2021).

Lopes ALK; KRIEGOVA E; LUKES J; KRIEGER MA; LUDWIG A. Distribution of Merlin in eukaryotes and first report of DNA transposons in kinetoplastid protists. PLoS One, v. 16, p. e0251133, 2021.

Vieira AZ; Raittz RT; Faoro H. Origin and evolution of nonulosonic acid synthases and their relationship with bacterial pathogenicity revealed by a large-scale phylogenetic analysis. Microb Genom. 2021 Apr;7(4). doi: 10.1099/mgen.0.000563. PMID: 33848237.

Cieslinski, Juliette ; Ribeiro, Victoria Stadler Tasca ; Kraft, Letícia ; Suss, Paula Hansen ; Rosa, Edvaldo ; Morello, Luis Gustavo ; Pillonetto, Marcelo ; Tuon, Felipe Francisco . Direct detection of microorganisms in sonicated orthopedic devices after in vitro biofilm production and different processing conditions. European Journal Of Orthopaedic Surgery & Traumatology, v. -, p. -, 2021.

Costa ADT, Jacomasso T, Mattos EC, Farias AB, Rampazzo RCP, Pinto RS, Tassi W, Marciano MAM, Pereira-Chioccola VL, Murphy HR, da Silva AJ, Krieger MA.  Ready-to-use qPCR for detection of Cyclospora cayetanensis or Trypanosoma cruzi in food matrices. Food Waterborne Parasitol. 2021; 22:e00111. doi: 10.1016/j.fawpar.2021.e00111.

Fonseca AS, Ramão A, Bürger MC, de Souza JES, Zanette DL, de Molfetta GA, de Araújo LF, de Barros E Lima Bueno R, Aguiar GM, Plaça JR, Alves CP, Dos Santos ARD, Vidal DO, Silva GEB, Panepucci RA, Peria FM, Feres O, da Rocha JJR, Zago MA, Silva WA Jr. ETV4 plays a role on the primary events during the adenoma-adenocarcinoma progression in colorectal cancer. BMC Cancer. 2021 Mar 1;21(1):207. doi: 10.1186/s12885-021-07857-x.PMID: 33648461.

Da Cunha Júnior AD, Zanette DL, Pericole FV, Olalla Saad ST, Barreto Campello Carvalheira J. Obesity as a Possible Risk Factor for Progression from Monoclonal Gammopathy of Undetermined Significance Progression into Multiple Myeloma: Could Myeloma Be Prevented with Metformin Treatment? Adv Hematol. 2021 Jan 18;2021:6615684. doi: 10.1155/2021/6615684. eCollection 2021.PMID: 33531904.

Gomig THB, Gontarski AM, Cavalli IJ, Souza RLR, Lucena ACR, Batista M, Machado KC, Marchini FK, Marchi FA, Lima RS, Urban CA, Marchi RD, Cavalli LR, Ribeiro EMSF. Integrated analysis of label-free quantitative proteomics and bioinformatics reveal insights into signaling pathways in male breast cancer. Genet Mol Biol. 2021 Mar 1;44(1):e20190410. doi: 10.1590/1678-4685-GMB-2019-0410. PMID: 33656060; PMCID: PMC7926483.

Huergo LF, Selim KA, Conzentino MS, Gerhardt ECM, Santos ARS, Wagner B, Alford JT, Deobald N, Pedrosa FO, de Souza EM, Nogueira MB, Raboni SM, Souto D, Rego FGM, Zanette DL, Aoki MN, Nardin JM, Fornazari B, Morales HMP, Borges VA, Nelde A, Walz JS, Becker M, Schneiderhan-Marra N, Rothbauer U, Reis RA, Forchhammer K. Magnetic Bead-Based Immunoassay Allows Rapid, Inexpensive, and Quantitative Detection of Human SARS-CoV-2 Antibodies. ACS Sens. 2021 Jan 26: acssensors.0c02544. doi: 10.1021/acssensors.0c02544. Online ahead of print.PMID: 33496577 .

Muñoz-Calderón A, Silva-Gomes NL, Apodaca S, Noya BA, Díaz-Bello Z, Souza LRQ, Costa ADT, Britto C, Moreira OC, Schijman AG. Toward the Establishment of a Single Standard Curve for Quantification of Trypanosoma cruzi Natural Populations Using a Synthetic Satellite Unit DNA Sequence. J Mol Diagn. 2021 doi: 10.1016/j.jmoldx.2021.01.007.

Raittz RT, Reginatto De Pierri C, Maluk M, Bueno Batista M, Carmona M, Junghare M, Faoro H, Cruz LM, Battistoni F, Souza E, Pedrosa FO, Chen WM, Poole PS, Dixon RA, James EK. Comparative Genomics Provides Insights into the Taxonomy of Azoarcus and Reveals Separate Origins of Nif Genes in the Proposed Azoarcus and Aromatoleum Genera. Genes (Basel). 2021 Jan 7;12(1):71. doi: 10.3390/genes12010071. PMID: 33430351; PMCID: PMC7825797.

Souza AA, Ducker C, Argaw D, King JD, Solomon AW, Biamonte MA, Coler RN, Cruz I, Lejon V, Levecke B, Marchini FK, Marks M, Millet P, Njenga SM, Noordin R, Paulussen R, Sreekumar E, Lammie PJ. Diagnostics and the neglected tropical diseases roadmap: setting the agenda for 2030. Trans R Soc Trop Med Hyg. 2021 Jan 28;115(2):129-135. doi: 10.1093/trstmh/traa118. PMID: 33169166; PMCID: PMC7842105.

Munhoz da Rocha IF, Amatuzzi RF, Lucena ACR, Faoro H, Alves LR. Cross-Kingdom Extracellular Vesicles EV-RNA Communication as a Mechanism for Host-Pathogen Interaction. Front Cell Infect Microbiol. 2020 Nov 18;10:593160. doi: 10.3389/fcimb.2020.593160. PMID: 33312966; PMCID: PMC7708329. 

Machado LO, Vieira LDN, Stefenon VM, Faoro H, Pedrosa FO, Guerra MP, Nodari RO. Molecular relationships of Campomanesia xanthocarpa within Myrtaceae based on the complete plastome sequence and on the plastid ycf2 gene. Genet Mol Biol. 2020 Jun 10;43(2):e20180377. doi: 10.1590/1678-4685-GMB-2018-0377. PMID: 32555941; PMCID: PMC7288672.  

 

Horodesky A, Castilho-Westphal GG, Pont GD, Faoro H, Balsanelli E, Tadra-Sfeir MZ, Cozer N, Pie MR, Ostrensky A. Metagenomic analysis of the bacterial microbiota associated with cultured oysters (Crassostrea sp.) in estuarine environments. An Acad Bras Cienc. 2020 Jun 26;92(suppl 1):e20180432. doi: 10.1590/0001-3765202020180432. PMID: 32609272. 

Horodesky A, Castilho-Westphal GG, Pont GD, Faoro H, Balsanelli E, Tadra-Sfeir MZ, Cozer N, Pie MR, Ostrensky A. Metagenomic analysis of the bacterial microbiota associated with cultured oysters (Crassostrea sp.) in estuarine environments. An Acad Bras Cienc. 2020 Jun 26;92(suppl 1):e20180432. doi: 10.1590/0001-3765202020180432. PMID: 32609272. 

Oliveira WK, Ferrarini M, Morello LG, Faoro H. Resistome analysis of bloodstream infection bacterial genomes reveals a specific set of proteins involved in antibiotic resistance and drug efflux. NAR Genom Bioinform. 2020 Jul 31;2(3):lqaa055. doi: 10.1093/nargab/lqaa055. PMID: 33575606; PMCID: PMC7671365.

Alexandrino, F.; Malgarin, J. S. ; Krieger, M. A. ; Morello, L. G. . Optimized broad-range real-time PCR-based method for bacterial screening of platelet concentrates. Brazilian Journal Of Biology (Online), v. 81, p. 692-700, 2020.

Ali N, Bello GL, Rossetti MLR, Krieger MA, Costa ADT. Demonstration of a fast and easy sample-to-answer protocol for tuberculosis screening in point-of-care settings: A proof of concept study. PLoS One. 2020 Dec 14;15(12):e0242408. doi: 10.1371/journal.pone.0242408

Batista M, Amorim JC, Lucena ACR, Kugeratski FG, de Paula Lima CV, Marchini FK. Genome-Wide Proteomics and Phosphoproteomics Analysis of Trypanosoma cruzi During Differentiation. Methods Mol Biol. 2020; 2116:139-159. doi: 10.1007/978-1-0716-0294-2_11. PMID: 32221920.

Bavia, L; Melanda, FN ; De Arruda, TB ; Mosimann, ALP ; Silveira, GF ; Aoki, MN ; Kuczera, D ; Sarzi, ML ; Junior, WLC ; Conchon-Costa, I ; Pavanelli, WR ; Duarte Dos Santos, CN ; Barreto, RC; Bordignon, J. Epidemiological study on dengue in southern Brazil under the perspective of climate and poverty. Scientific Reports, v. 10, p. 1-16, 2020.

Blanes L; Pyke, G. H. ; Kalman, J. ; Bordin, D. M. ; Doble, P. . Patterns of floral nectar standing crops allow plants to manipulate their pollinators. Scientific Reports, v. 10, p. 160, 2020.

Bordin, Dayanne ; Latgé, Samara ; Pyke, Graham ; Kalman, John ; Doble, Philip ; Genta, Fernando ; Blanes, Lucas . A Simple Approach to Analyze Sugar Nectar Composition in Flowers Using Capillary Electrophoresis and Enzymatic Assays. Journal Of The Brazilian Chemical Society, v. 00, p. 1-6, 2020.

Blanes, L.. Capillary and Microchip Electrophoresis. In: Rosalind Wolstenholme Susan Jickells Shari Forbes. (Org.). Analytical Techniques in Forensic Science. 1ed.: , 2020, v. , p. 407-423. (Book chapter)

Cardoso, RafaeL M. ; Santos, Robson O. Dos ; Munoz, Rodrigo A. A. ; Garcia, Carlos D. ; Blanes, Lucas . A Multi-Pump Magnetohydrodynamics Lab-On-A-Chip Device for Automated Flow Control and Analyte Delivery. SENSORS, v. 20, p. 4909, 2020.

Díaz-Olmos Y, Batista M, Ludwig A, Marchini FK. Characterising ISWI chromatin remodeler in Trypanosoma cruzi. Mem Inst Oswaldo Cruz. 2020;115:e190457. doi: 10.1590/0074-02760190457. Epub 2020 May 18. PMID: 32428081; PMCID: PMC7233268.

Forrest DM, Batista M, Marchini FK, Tempone AJ, Traub-Csekö YM. Proteomic analysis of exosomes derived from procyclic and metacyclic-like cultured Leishmania infantum chagasi. J Proteomics. 2020 Sep 15;227:103902. doi: 10.1016/j.jprot.2020.103902. Epub 2020 Jul 14. PMID: 32673755.

Horodesky A, Castilho-Westphal GG, Pont GD, Faoro H, Balsanelli E, Tadra-Sfeir MZ, Cozer N, Pie MR, Ostrensky A. Metagenomic analysis of the bacterial microbiota associated with cultured oysters (Crassostrea sp.) in estuarine environments. An Acad Bras Cienc. 2020 Jun 26;92(suppl 1):e20180432. doi: 10.1590/0001-3765202020180432. PMID: 32609272.

Manta FSN, Leal-Calvo T, Moreira SJM, Marques BLC, Ribeiro-Alves M, Rosa PS, Nery JAC, Rampazzo RCP, Costa ADT, Krieger MA, Moraes MO. Ultra-sensitive detection of Mycobacterium leprae: DNA extraction and PCR assays. PLoS Negl Trop Dis. 2020 May 26;14(5):e0008325. doi: 10.1371/journal.pntd.0008325.

Machado LO, Vieira LDN, Stefenon VM, Faoro H, Pedrosa FO, Guerra MP, Nodari RO. Molecular relationships of Campomanesia xanthocarpa within Myrtaceae based on the complete plastome sequence and on the plastid ycf2 gene. Genet Mol Biol. 2020 Jun 10;43(2):e20180377. doi: 10.1590/1678-4685-GMB-2018-0377. PMID: 32555941; PMCID: PMC7288672.

Munhoz da Rocha IF, Amatuzzi RF, Lucena ACR, Faoro H, Alves LR. Cross-Kingdom Extracellular Vesicles EV-RNA Communication as a Mechanism for Host-Pathogen Interaction. Front Cell Infect Microbiol. 2020 Nov 18;10:593160. doi: 10.3389/fcimb.2020.593160. PMID: 33312966; PMCID: PMC7708329.

Oliveira, Willian K ; Ferrarini, Mariana ; Morello, Luis G ; Faoro, Helisson . Resistome analysis of bloodstream infection bacterial genomes reveals a specific set of proteins involved in antibiotic resistance and drug efflux. NAR Genomics and Bioinformatics, v. 2, p. 1, 2020.

Queiroz JADS, Botelho-Souza LF, Nogueira-Lima FS, Rampazzo RCP, Krieger MA, Zambenedetti MR, Marchini FK, Borghetti IA, Pereira DB, Salcedo JMV, Vieira DS, Santos AOD. Phylogenetic Characterization of Arboviruses in Patients Suffering from Acute Fever in Rondônia, Brazil. Viruses. 2020 Aug 14;12(8):889. doi: 10.3390/v12080889. PMID: 32823806; PMCID: PMC7472125.

Santana SS, Pitanga TN, de Santana JM, Zanette DL, Vieira JJ, Yahouédéhou SCMA, Adanho CSA, Viana SM, Luz NF, Borges VM, Goncalves MS. Hydroxyurea Scavenges Free Radicals and Induces the Expression of Antioxidant Genes in Human Cell Cultures Treated With Hemin. Front Immunol. 2020 Jul 17;11:1488. doi: 10.3389/fimmu.2020.01488. eCollection 2020.PMID: 32765515.

Rampazzo RCP, Graziani AC, Leite KK, Surdi JA, Biondo CA, Costa MLN, Jacomasso T, Cereda M, De Fazio M, Bianchessi MA, Moreira OC, Britto C, Costa JDN, Góes VM, da Silva AJ, Krieger MA, Costa ADT. Proof of Concept for a Portable Platform for Molecular Diagnosis of Tropical Diseases: On-Chip Ready-to-Use Real-Time Quantitative PCR for Detection of Trypanosoma cruzi or Plasmodium spp. J Mol Diagn. 2019 Sep;21(5):839-851. doi:10.1016/j.jmoldx.2019.04.008

 

The inhibition of adipogenesis via an in vitro assay can reduce animal use by more precisely estimating the starting dose for the acute toxic class method. Abud APR, Kuligovski C, Corrêa NCR, de Moraes ECP, Caruso RRB, Schuck DC, Brohem CA, Dallagiovanna B, de Aguiar AM. Toxicol Lett. 2019 Sep 1;311:80-90.  doi: 10.1016/j.toxlet.2019.04.009

 

Gomig THB, Cavalli IJ, Souza RLR, Vieira E, Lucena ACR, Batista M, Machado KC, Marchini FK, Marchi FA, Lima RS, de Andrade Urban C, Cavalli LR, Ribeiro EMSF. Quantitative label-free mass spectrometry using contralateral and adjacent breast tissues reveal differentially expressed proteins and their predicted impacts on pathways and cellular functions in breast cancer. J Proteomics. 2019 May 15;199:1-14. doi: 10.1016/j.jprot.2019.02.007. Epub 2019 Feb 14.

 

Gomig THB, Cavalli IJ, Souza RLR, Lucena ACR, Batista M, Machado KC, Marchini FK, Marchi FA, Lima RS, Urban CA, Cavalli LR, Ribeiro EMSF. High-throughput mass spectrometry and bioinformatics analysis of breast cancer proteomic data. Data Brief. 2019 Jun 10;25:104125. doi: 10.1016/j.dib.2019.104125. eCollection 2019 Aug.

 

Lucena ACR, Amorim JC, de Paula Lima CV, Batista M, Krieger MA, de Godoy LMF, Marchini FK. Quantitative phosphoproteome and proteome analyses emphasize the influence of phosphorylation events during the nutritional stress of Trypanosoma cruzi: the initial moments of in vitro metacyclogenesis. Cell Stress Chaperones. 2019 Sep;24(5):927-936. doi: 10.1007/s12192-019-01018-7. Epub 2019 Jul 31.

 

AOKI, M. N.; AMARANTE, Marla Karine ; OLIVEIRA, Carlos Eduardo Coral de ; WATANABE, M.A.E. . Biomarkers in Non-Small Cell Lung Cancer: Perspectives of Individualized Targeted Therapy. Anti-Cancer Agents in Medicinal Chemistry, v. 18, p. 2070-2077, 2019

 

Helisson Faoro, Willian K. Oliveira, Vinicius A. Weiss, Michelle Z. Tadra-Sfeir, Rodrigo L. Cardoso, Eduardo Balsanelli, Liziane C. C. Brusamarello-Santos, Doumit Camilios-Neto, Leonardo M. Cruz, Roberto T. Raittz, Ana C. Q. Marques, John LiPuma, Cyntia M. T. Fadel-Picheth, Emanuel M. Souza, Fabio O. Pedrosa. Genome comparison between clinical and environmental strains of Herbaspirillum seropedicae reveals a potential new emerging bacterium adapted to human hosts. BMC Genomics. 2019, 2;20(1):630

Liziane Cristina Campos Brusamarello-Santos, Dayane Alberton, Glaucio Valdameri, Doumit Camilios-Neto, Rafael Covre, Katia Lopes, Michelle Zibette Tadra-Sfeir, Helisson Faoro, Rose Adele Monteiro, Adriano Barbosa Silva, William J Broughton, Fabio Oliveira Pedrosa, Roseli Wassem, Emanuel M Souza. Modulation of defense and iron homeostasis genes in rice roots by the diazotrophic endophyte Herbaspirillum seropedicae. Sci Rep. 2019, 22;9(1):10573.

 

 Strottmann DM, Zanluca C, Mosimann ALP, Koishi AC, Auwerter NC, Faoro H, Cataneo AHD, Kuczera D, Wowk PF, Bordignon J, Duarte Dos Santos CN. Genetic and biological characterisation of Zika virus isolates from different Brazilian regions. Mem Inst Oswaldo Cruz. 2019;114:e190150.

 

Ceccon DM, Faoro H, Lana PDC, Souza EM, Pedrosa FO. Metataxonomic and metagenomic analysis of mangrove microbiomes reveals community patterns driven by salinity and pH gradients in Paranaguá Bay, Brazil. Sci Total Environ. 2019 Jul 27;694:133609.

 

Tschá MK, Suzukawa AA, Gräf T, Piancini LDS, da Silva AM, Faoro H, Riediger IN, Medeiros LC, Wowk PF, Zanluca C, Duarte Dos Santos CN. Identification of a novel alphavirus related to the encephalitis complexes circulating in Southern Brazil. Emerg Microbes Infect. 2019;8(1):920-933.

 

Andreazza AP, Cardoso RLA, Cocco J, Guizelini D, Faoro H, Tadra-Sfeir MZ, Balsanelli E, Cruz LM, Fadel-Picheth CMT, Donatti L, Souza EM, Foerster LA, Pedrosa FO, Chubatsu LS. Genome Analysis of Entomopathogenic Bacillus sp. ABP14 Isolated from a Lignocellulosic Compost. Genome Biol Evol. 2019 Jun 1;11(6):1658-1662.

 

Gravina HD, Suzukawa AA, Zanluca C, Cardozo Segovia FM, Tschá MK, Martins da Silva A, Faoro H, da Silva Ribeiro R, Mendoza Torres LP, Rojas A, Ferrerira L, Costa Ribeiro MCVD, Delfraro A, Duarte Dos Santos CN. Identification of insect-specific flaviviruses in areas of Brazil and Paraguay experiencing endemic arbovirus transmission and the description of a novel flavivirus infecting Sabethes belisarioi. Virology. 2019 Jan 15;527:98-106.

 

Anelise Beneduzi, Luiz Gustavo dos Anjos Borges, Samuel Mazzinghy Alvarenga, Helisson Faoro, Emanuel Maltempi de Souza, Luciano Kayser Vargas, Luciane Maria Pereira Passaglia. Distinct grazing pressure loads generate different impacts on bacterial community in a long-term experiment in Pampa biome. Appl Soil Ecol. 2019 Jan;137(167-177).

 

Peres da Silva R, Longo LGV, Cunha JPCD, Sobreira TJP, Rodrigues ML, Faoro H, Goldenberg S, Alves LR, Puccia R. Comparison of the RNA Content of Extracellular Vesicles Derived from Paracoccidioides brasiliensis and Paracoccidioides lutzii. Cells. 2019 Jul 23;8(7). pii: E765.

MEYER, SARAH ; CLARKE, CALLUM ; DOS SANTOS, ROBSON OLIVEIRA ; BISHOP, DAVID ; KRIEGER, MARCO A. ; BLANES, LUCAS . Developing self-generated calibration curves using a capillary-driven wax-polyester lab on a chip device and thermal gates. MICROCHEMICAL JOURNAL, v. 146, p. 708-712, 2019.

MORELLO, LUIS GUSTAVO; DALLA-COSTA, LÍBERA MARIA ; FONTANA, RAFAEL MIALSKI ; NETTO, ANA CRISTINA SCHMIDT DE OLIVEIRA ; PETTERLE, RICARDO RASMUSSEN ; CONTE, DANIELI ; PEREIRA, LUCIANE APARECIDA ; KRIEGER, MARCO AURÉLIO ; RABONI, SONIA MARA . Assessment of clinical and epidemiological characteristics of patients with and without sepsis in intensive care units of a tertiary hospital. EINSTEIN (SÃO PAULO), v. 17, p. 1-8, 2019.

 

SCHMIDT DE OLIVEIRA-NETTO, ANA CRISTINA ; MORELLO, LUIS G ; DALLA-COSTA, LIBERA M ; PETTERLE, RICARDO R ; FONTANA, RAFAEL M ; CONTE, DANIELI ; PEREIRA, LUCIANE A ; RABONI, SONIA M . Procalcitonin, C-Reactive Protein, Albumin, and Blood Cultures as Early Markers of Sepsis Diagnosis or Predictors of Outcome: A Prospective Analysis. Clinical Pathology, v. 12, p. 2632010X1984767, 2019.

 

TARANTO, VITOR ; UELAND, MAIKEN ; FORBES, SHARI L. ; BLANES, LUCAS. The analysis of nitrate explosive vapour samples using Lab-on-a-chip instrumentation. JOURNAL OF CHROMATOGRAPHY A, v. 1602, p. 467-473, 2019.

 

Zanette DL, Santiago RP, Leite IPR, Santana SS, da Guarda C, Maffili VV, Ferreira JRD, Adanho CSA, Yahouedehou SCMA, Menezes IL, Goncalves MS. Differential gene expression analysis of sickle cell anemia in steady and crisis state. Ann Hum Genet. 2019 Sep;83(5):310-317. doi: 10.1111/ahg.12290. Epub 2019 Jan 30. PubMed PMID: 30698275.

 

RIBEIRO, Y. C. ; ROBE, L. J. ; VELUZA, D. S. ; SANTOS, C. M. B. ; LOPES, A. L. K. ; KRIEGER, M.A. ; LUDWIG, A. Study of VIPER and TATE in kinetoplastids and the evolution of tyrosine recombinase retrotransposons. Mobile DNA, v. 10, p. 34, 2019.

Aoki, MN.; Amarante, MK ; Oliveira, CECD ; Watanabe, MAE. Biomarkers in Non-Small Cell Lung Cancer: Perspectives of Individualized Targeted Therapy. Anti-Cancer Agents in Medicinal Chemistry, v. 18, p. 2070-2077, 2019.

De Menezes JPB, Khouri R, Oliveira CVS, Petersen ALOA, de Almeida TF, Mendes FRL, Rebouças ADAD, Lorentz AL, Luz NF, Lima JB, Ramos PIP, Soares RP, Rugani JN, Buck GA, Krieger MA, Marchini FK, Vivarini ÁC, Lopes UG, Borges VM, Veras PST. Proteomic Analysis Reveals a Predominant NFE2L2 (NRF2) Signature in Canonical Pathway and Upstream Regulator Analysis of <i>Leishmania</i>-Infected Macrophages. Front Immunol. 2019 Jun 28;10:1362. doi: 10.3389/fimmu.2019.01362. PMID: 31316499; PMCID: PMC6611007.

Wippel HH, Malgarin JS, Martins ST, Vidal NM, Marcon BH, Miot HT, Marchini FK, Goldenberg S, Alves LR. The Nuclear RNA-binding Protein RBSR1 Interactome in Trypanosoma cruzi. J Eukaryot Microbiol. 2019 Mar;66(2):244-253. doi: 10.1111/jeu.12666. Epub 2018 Jul 29. PMID: 29984450.

Kugeratski FG, Batista M, Lima CVP, Neilson LJ, da Cunha ES, de Godoy LM, Zanivan S, Krieger MA, Marchini FK. Mitogen-Activated Protein Kinase Kinase 5 Regulates Proliferation and Biosynthetic Processes in Procyclic Forms of Trypanosoma brucei. J Proteome Res. 2018 Jan 5;17(1):108-118. doi: 10.1021/acs.jproteome.7b00415. Epub 2017 Nov 7.

 

Martins-da-Silva A, Telleria EL, Batista M, Marchini FK, Traub-Csekö YM, Tempone AJ. Identification of Secreted Proteins Involved in Nonspecific dsRNA-Mediated Lutzomyia longipalpis LL5 Cell Antiviral Response. Viruses. 2018 Jan 18;10(1). pii: E43. doi: 10.3390/v10010043.

 

Ostrensky A, Horodesky A, Faoro H, Balsanelli E, Sfeir MZT, Cozer N, Pie MR, Dal Pont G, Castilho-Westphal GG. Metagenomic evaluation of the effects of storage conditions on the bacterial microbiota of oysters Crassostrea gasar (Adanson, 1757). J Appl Microbiol. 2018 Nov;125(5):1435-1443.

 

Pillonetto M, Arend LN, Faoro H, D’Espindula HRS, Blom J, Smits THM, Mira MT, Rezzonico F. Emended description of the genus Phytobacter, its type species Phytobacter diazotrophicus (Zhang 2008) and description of Phytobacter ursingii sp. nov. Int J Syst Evol Microbiol. 2018 Jan;68(1):176-184.

 

TASCA RIBEIRO, VICTORIA STADLER ; TUON, FELIPE FRANCISCO ; KRAFT, LETÍCIA ; SUSS, PAULA HANSEN ; WOLLMANN, LUCIANA CRISTINA ; RODERJAN, JOÃO GABRIEL ; BRITO, DIEGO ARMANDO ; ALEXANDRINO, FABIANA ; MALGARIN, JULIANE SOLDI ; MORELLO, LUIS GUSTAVO ; DA COSTA, FRANCISCO DINIZ AFFONSO ; PILLONETTO, MARCELO . Conventional culture method and qPCR using 16S rDNA for tissue bank: a comparison using a model of cardiac tissue contamination. JOURNAL OF MEDICAL MICROBIOLOGY, v. -, p. 1, 2018.

 

PETTERLE, RICARDO RASMUSSEN ; OLIVEIRA NETTO, ANA CRISTINA SCHMIDT DE ; COSTA, LIBERA MARIA DALLA ; KRIEGER, MARCO AURELIO; MORELLO, LUIS GUSTAVO; RABONI, SONIA MARA ; MIALSKI, RAFAEL . ANÁLISE DO TEMPO DE INTERNAMENTO NA UTI DE PACIENTES ATENDIDOS EM UM HOSPITAL UNIVERSITÁRIO EM CURITIBA-PR. REVISTA BRASILEIRA DE BIOMETRIA, v. 36, p. 563, 2018.

 

ISHIKAWA, ALINE AKEMI ; BORDIN, DAYANNE MOZANER ; DE CAMPOS, EDUARDO GERALDO ; BLANES, LUCAS ; DOBLE, PHILIP ; DE MARTINIS, BRUNO SPINOSA . A Gas Chromatography-Mass Spectrometry Method for Toxicological Analysis of MDA, MDEA and MDMA in Vitreous Humor Samples from Victims of Car Accidents. JOURNAL OF ANALYTICAL TOXICOLOGY, v. 42, p. 661-666, 2018.

 

ISHIKAWA, ALINE AKEMI ; BORDIN, DAYANNE MOZANER ; DE CAMPOS, EDUARDO GERALDO ; BLANES, LUCAS ; DOBLE, PHILIP ; DE MARTINIS, BRUNO SPINOSA . A Gas Chromatography-Mass Spectrometry Method for Toxicological Analysis of MDA, MDEA and MDMA in Vitreous Humor Samples from Victims of Car Accidents. JOURNAL OF ANALYTICAL TOXICOLOGY, v. 42, p. 661-666, 2018.

 

Lago TS, Silva JA, Lago EL, Carvalho EM, Zanette DL, Castellucci LC. The miRNA 361-3p, a Regulator of GZMB and TNF Is Associated With Therapeutic Failure and Longer Time Healing of Cutaneous Leishmaniasis Caused by L. (viannia) braziliensis. Front Immunol. 2018 Nov 14;9:2621. doi: 10.3389/fimmu.2018.02621. eCollection 2018. PubMed PMID: 30487794; PubMed Central PMCID: PMC6247993.

 

Luz NF, Khouri R, Van Weyenbergh J, Zanette DL, Fiuza PP, Noronha A, Barral A, Boaventura VS, Prates DB, Chan FK, Andrade BB, Borges VM. Leishmania braziliensis Subverts Necroptosis by Modulating RIPK3 Expression. Front Microbiol. 2018 Sep 28;9:2283. doi: 10.3389/fmicb.2018.02283. eCollection 2018. PubMed PMID: 30323793; PubMed Central PMCID: PMC6172319.

 

Santiago RP, Guarda CC, Figueiredo CVB, Fiuza LM, Aleluia MM, Adanho CSA, Carvalho MOS, Pitanga TN, Zanette DL, Lyra IM, Nascimento VML, Vercellotti GM, Belcher JD, Goncalves MS. Serum haptoglobin and hemopexin levels are depleted in pediatric sickle cell disease patients. Blood Cells Mol Dis. 2018 Sep;72:34-36. doi: 10.1016/j.bcmd.2018.07.002. Epub 2018 Jul 19. PubMed PMID: 30033157; PubMed Central PMCID: PMC6389271.

 

Vidal DO, Ramão A, Pinheiro DG, Muys BR, Lorenzi JCC, de Pádua Alves C, Zanette DL, de Molfetta GA, Duarte G, Silva WA Jr. Highly expressed placental miRNAs control key biological processes in human cancer cell lines. Oncotarget. 2018 May 4;9(34):23554-23563. doi: 10.18632/oncotarget.25264. eCollection 2018 May 4. PubMed PMID: 29805755; PubMed Central PMCID: PMC5955126.

 

de SOUZA, D. A. S. ; PAVONI, D. P. ; KRIEGER, M.A. ; LUDWIG, A. . Evolutionary analyses of myosin genes in trypanosomatids show a history of expansion, secondary losses and neofunctionalization. Scientific Reports, v. 8, p. 1376, 2018.

SANTOS, C. M. B. ; LUDWIG, A. ; KESSLER, R. L. ; RAMPAZZO, R. C. P. ; INOUE, A. H. ; KRIEGER, M.A. ; PAVONI, D. P. ; PROBST, C.M. . Trypanosoma cruzi transcriptome during axenic epimastigote growth curve. Memórias do Instituto Oswaldo Cruz, v. 113, p. e170404, 2018.

DALLA-COSTA, LIBERA M. ; MORELLO, LUIS G. ; CONTE, DANIELI ; PEREIRA, LUCIANE A. ; PALMEIRO, JUSSARA K. ; AMBROSIO, ALTAIR ; CARDOZO, DAYANE ; KRIEGER, MARCO A. ; RABONI, SONIA M. Comparison of DNA extraction methods used to detect bacterial and yeast DNA from spiked whole blood by real-time PCR. JOURNAL OF MICROBIOLOGICAL METHODS, v. 140, p. 61-66, 2017.

 

BISHOP, DAVID P. ; BLANES, LUCAS; WILSON, ALEXANDER B. ; WILBANKS, THOR ; KILLEEN, KEVIN ; GRIMM, RUDOLF ; WENZEL, ROSS ; MAJOR, DEREK ; MACKA, MIREK ; CLARKE, DAVID ; SCHMID, ROBIN ; COLE, NERIDA ; DOBLE, PHILIP A. Microfluidic high performance liquid chromatography-chip hyphenation to inductively coupled plasma-mass spectrometry. JOURNAL OF CHROMATOGRAPHY A, v. 1497, p. 64-69, 2017.

 

BENSON, NATASHA; DOS SANTOS, ROBSON OLIVERIA; GRIFFITHS, KATE; COLE, NERIDA; DOBLE, PHILIP; ROUX, CLAUDE; BLANES, LUCAS. The development of a stabbing machine for forensic textile damage analysis. FORENSIC SCIENCE INTERNATIONAL, v. 273, p. 132-139, 2017.

 

ALI, N. ; RAMPAZZO, R. C. P. ; COSTA, ALEXANDRE D.T.; KRIEGER, MARCO A. Current Nucleic Acid Extraction Methods and Their Implications to Point-of-Care Diagnostics. Biomed Research International, v. 2017, p. 1-13, 2017.

 

RAMPAZZO, RITA CP; SOLCÀ, MANUELA S ; SALES SANTOS, LILIANE CELESTINO ; DE NOVAES PEREIRA, LAIS ; OLIVEIRA GUEDES, JOSÉ CARLOS ; TAVARES VERAS, PATRÍCIA SAMPAIO ; MOTHÉ FRAGA, DEBORAH BITTENCOURT ; KRIEGER, MARCO A.; COSTA, ALEXANDRE D. T.. A ready-to-use duplex qPCR to detect Leishmania infantum DNA in naturally infected dogs. VETERINARY PARASITOLOGY, v. 246, p. 100-107, 2017.

 

JANISSEN, RICHARD ; SAHOO, PRASANA K. ; SANTOS, CLELTON A ; DA SILVA, ALDELIANE M. ; VON ZUBEN, ANTONIO A.G. ; SOUTO, DENIO E. P. ; Costa, Alexandre D.T. ; CELEDON, PAOLA ; ZANCHIN, NILSON I.T. ; ALMEIDA, DIOGO B. ; OLIVEIRA, DOUGLAS S. ; KUBOTA, LAURO T. ; CESAR, CARLOS LENZ ; SOUZA, ANETE PEREIRA DE ; COTTA, MONICA ALONSO . InP Nanowire Biosensor with tailored Biofunctionalization: Ultrasensitive and Highly Selective Disease Biomarker Detection. NANO LETTERS, v. 17, p. 5938-5949, 2017.

 

Quintela-Carvalho G, Luz NF, Celes FS, Zanette DL, Andrade D, Menezes D, Tavares NM, Brodskyn CI, Prates DB, Gonçalves MS, de Oliveira CI, Almeida RP, Bozza MT, Andrade BB, Borges VM. Heme Drives Oxidative Stress-Associated Cell Death in Human Neutrophils Infected with Leishmania infantum. Front Immunol. 2017 Nov 23;8:1620. doi: 10.3389/fimmu.2017.01620. eCollection 2017. PubMed PMID: 29218050; PubMed Central PMCID: PMC5703736.

 

Molfetta GA, Zanette DL, Santos JE, Silva WA Jr. Mutational screening in the LDLR gene among patients presenting familial hypercholesterolemia in the Southeast of Brazil. Genet Mol Res. 2017 Aug 31;16(3). doi: 10.4238/gmr16039226. PubMed PMID: 28873201.

 

Malta-Santos H, Andrade BB, Zanette DL, Costa JM, Bozza PT, Bandeira-Melo C, Barral A, França-Costa J, Borges VM. Resolvin D1 drives establishment of Leishmania amazonensis infection. Sci Rep. 2017 Apr 10;7:46363. doi: 10.1038/srep46363. PubMed PMID: 28393908; PubMed Central PMCID: PMC5385529.

 

de Sousa JF, Torrieri R, Serafim RB, Di Cristofaro LF, Escanfella FD, Ribeiro R, Zanette DL, Paçó-Larson ML, da Silva WA Jr, Tirapelli DP, Neder L, Carlotti CG Jr, Valente V. Expression signatures of DNA repair genes correlate with survival prognosis of astrocytoma patients. Tumour Biol. 2017 Apr;39(4):1010428317694552. doi: 10.1177/1010428317694552. PubMed PMID: 28378638.

 

Santiago RP, Vieira C, Adanho CSA, Santana SS, Guarda CC, Figueiredo CVB, Fiuza LM, Pitanga TN, Ferreira JRD, Aleluia MM, Oliveira RM, Zanette DL, Lyra IM, Goncalves MS. Laboratory and Genetic Biomarkers Associated with Cerebral Blood Flow Velocity in Hemoglobin SC Disease. Dis Markers. 2017;2017:6359871. doi: 10.1155/2017/6359871. Epub 2017 Jul 16. PubMed PMID: 28790534; PubMed Central PMCID: PMC5534284.

 

Furtado FM, Scheucher PS, Santana BA, Zanette DL, Calado RDT, Rego EM, Matos DM, Falcão RP. Comparison of microRNA expression in high-count monoclonal B-cell lymphocytosis and Binet A chronic lymphocytic leukemia. Rev Bras Hematol Hemoter. 2017 Jul – Sep;39(3):237-243. doi: 10.1016/j.bjhh.2017.03.006. Epub 2017 Apr 22. PubMed PMID: 28830603; PubMed Central PMCID: PMC5568587.

 

SOUZA, C. ; ZANCHIN, N. I. T. ; KRIEGER, M. A. ; LUDWIG, A. . In silico analysis of amino acid variation in human respiratory syncytial virus: insights into immunodiagnostics. Memórias do Instituto Oswaldo Cruz , v. 112, p. 655-663, 2017.